kithairon.PickList

aoeu

class kithairon.PickList(df: DataFrame)

Bases: object

A PickList in Echo-software-compatible format.

__init__(df: DataFrame)

Methods

__init__(df)
all_plate_names()
concat(picklists)
filter(*args, **kwargs)
get_contents([plate, well, name])	Recursively get the contents of a particular destination.
join(*args, **kwargs)
non_intermediate_source_plate_names()
non_intermediate_transfers()
optimize_well_transfer_order([labware, method])
plate_transfer_graph()	Generate graph of plate usage (source plate -> destination plate).
read_csv(path)	Read a picklist from a csv file.
select(*args, **kwargs)
to_pandas()
to_polars()
validate([surveys, labware, raise_on])	Check the picklist for errors and potential problems.
well_transfer_multigraph()	Generate a multigraph of each transfer.
with_columns(*args, **kwargs)
with_segment_index()
write_csv(path)	Write picklist to a csv file (usable by Labcyte/Beckman software).

Attributes

data

get_contents(

plate: str | None = None,

well: str | None = None,

name: str | None = None,

) → DataFrame

Recursively get the contents of a particular destination.

plate_transfer_graph() → DiGraph

Generate graph of plate usage (source plate -> destination plate).

classmethod read_csv(path: str) → Self

Read a picklist from a csv file.

validate(

surveys: SurveyData | None = None,

labware: Labware | None = None,

raise_on: Literal[False, True, 'warning', 'error'] = 'error',

) → tuple[list[str], list[str]]

Check the picklist for errors and potential problems.

well_transfer_multigraph() → MultiDiGraph

Generate a multigraph of each transfer.

write_csv(path: str) → None

Write picklist to a csv file (usable by Labcyte/Beckman software).